I have not heard of the 01 250 having the same problem as the 125, but I know this- The 02 RM250 does have a revised lower power valve linkage connection similar to the 02 RM125. IMO, it might not be a bad idea to investigate swapping to the 02 design.
Judging by the shop manual pictures, it appears the systems would drop right in. The 02 125 part is approx $40 + the gasket & time to pull the sidecover.
Our 01 125 experienced a failure of the lower plastic linkage keeper, but luckily there was no damage beyond the linkage and the plastic keeper piece. My 01 250 had no troubles with the plastic linkage.
I've heard of some more aggressive MX riders having several failures on their 01 125's, which makes me wonder if the failure is related to heat softening/melting the plastic keeper.