An old timer pro engine tuner told me that drilling your own jets used to be common practice back in the 70's. You could buy a kit at an auto parts store which had a few brass jets and an assortment of drills along with a handle that had a chuck on the end of it. Drilling jets was done strictly by hand, i.e. you twirl that contraption with your fingers. If you made the hole too big, then you would heat up the brass jet and fill it with a drop of solder, and start over again.
It occurs to me that you don't really care about jet I.D. as much as you care about actual flow rate. So couldn't you just measure flow rate of your custom-drilled jet by comparing it to the rate you measure thru a known "reference" jet?
For example, fill a container with 1 liter of fluid (e.g. water) and let it drip till empty thru a known-sized jet and measure the time it took. Repeat the same with your custom-drilled jet, and calculate flow ratio from there. Flow rate depends on "head" of fluid (i.e. volume and height above orifice), as well as on viscosity, so you will have to hold those 2 things as consistent as possible. Recalibrating with a known jet every time should eliminate the viscosity variable, and using a large volume of fluid should improve "head" accuracy.
A more convenient variation on the same theme is to build a "fluid divider" as follows. Connect a reference jet to the left side of an upside-down Y fitting, and a custom jet to the right side. The "common" side of Y goes to a source container of fluid. Place 2 containers to capture flow thru the jets. If both jets have the same flow rate, then both "capture" containers will contain exactly the same amount of fluid, i.e. 1/2 of what was in the "source" container. So by weighing what you capture from reference jet and comparing to the weight of fluid captured from the custom jet you can once again determine flow ratio.