I've never changed to an aftermarket pipe, but as far as the temp changes I can tell you from 80-90 degree weather down to 20-40 degree weather definetely requires richer jetting. I think my main was pretty rich (165) during the warmer weather, but the bike ran smooth so I let it go. During the summer I had the jet needle leaned down one from the middle position and a 48 pilot. Now that it gets below 30 I have gradually gone to a 52 pilot and needle in the middle spot. There is no way my bike would run decent with this jetting in the summer.
I generally try to go as rich as possible until the bike 'craps out' and then go a little leaner from there on the main, needle, and pilot. I read that on DRN and it seems to work great for me. My bike will surge after I run WOT if the pilot is too lean. If you do change any jets, be careful not to crank them down to hard, they are brass and I cracked one with surprisingly little pressure.
I like to see a little smoke out the back. It smokes quite a bit before it warms up. Then it's usually just a light puff. Once in a while it seems to smoke a lot when I stop after a long run, let it idle, and gun it a few times, haven't really given this much concern, I think it might have more to do with the silencer packing that needs replacing, but that's another story, anyway. good luck. Glad you got a nice performance change, must be nice.
Joe Chief