You may need a richer main jet. The main jet is used from about 1/2 throttle to full throttle. The main jet is the main fuel supply at these amounts. I would do a plug chop to figure that out...It could also be the jet needle. This is used from about 1/4 to 3/4 throttle...so if that's where you are experiencing the problem, this is most likely it.
Also, is it a stock pipe? There are a few pipes out there that make the lower hit harder but what you gain in one aspect, you lose in another.