RJ: OK...I excuse him...but only cuz you asked ;)
sled: Specifics help. Coming from the 4-stroke side, you probably are used to pretty solid bottom-end pull, and not too much in the way of screaming top-end?
To start with, have a good idea of the direction you want to go and you'll have a lot better chance of getting there. For example, if you are indeed looking for 4-stroke like pull on the bottom, a KG-35 FmF will likely suit you better than an all-round or hi-end pipe.
A DeltaForceII reed cage with tension set to low will serve you far better than any aftermarket reed on the stock cage, or a boyesen radvalve.
The basic modifications as noted on CDave's site:
http://justkdx.dirtrider.net
will go a long way toward getting your bike set up well.
No modification you do is going to reach its full potential if your jetting isn't attended to. Riding at the elevations you list, rejetting will be particularly important. CDave's site will get you on the right track with that, too. The power delivery of your bike will change depending on jetting regardless of which pipe you choose.
Again..it all depends on the overall effect you're after.
All the speed and power you can get isn't worth much if your suspension can't handle the trail. Towit:
Set your sag.
Set your clickers.
Respring your forks (unless you weight about 150# with your gear).
Might still be time to save yourself some grief in the lubrication area, too. Take your suspension (unitrack/swingarm/steering stem) apart and grease it.
Braahp: :) Okie should'a stuck to his guns, though. He's right.