When I got my Kdx200 (also an '89), I had to put it together. The whole bottom end was torn appart and in a big box, so needless to say I had to set the timming. I set it in the middle one first, and started it and rode it around the driveway (without side cover). Then I set it to the forward one, and rode it around, it seemed to have a little more bottom end* this way. Lastly I put it in the back one, this one had a little more top end*. I liked it this way the most and left it that way.
* This is going by my seat-of-the-pants dyno.