I found my '02 KX250 was rich from the factory (The stock main jet is actually a 165. Maybe your dealer changed it). When I rode it for the first time it sputtered at low revs, hit pretty good mid-range, and then sputtered at high Rpm's.
So what I did was go to a 162 main, kept the stock needle, but moved it to the first position, then backed out the air screw a 1/4 turn. It ran MUCH better then.
I too ride the woods and trails, so I spend a lot of time in 2nd and 3rd. It still seems a little rich at low RPM's so I'm going to drop the pilot down to a 52 and play with the clip and airscrew positions.
You really should do a complete plug check (at 1/4, 1/2, 3/4 throttle and WFO). That will be the only way you will know what it's doing. I hope my experience gives you some ideas but still, do the plug check. You might want to post in the "Mods and Performance Forum" There are some good people over there that can really help you. Good luck.
P.S. Also check the jetting links at the top of this forum! :aj: